| The Mismeasure of Man | 1981 | Non-fiction |
| Wonderful Life: The Burgess Shale and the Nature of History | 1989 | Non-fiction |
| Dinosaur in a Haystack: Reflections in Natural History | 1995 | Non-fiction |
| Darwinian Fundamentalism | 1997 | |
| Bully for Brontosaurus | 1991 | Non-fiction |
| Time's Arrow, Time's Cycle: Myth and Metaphor in the Discovery of Geological Time | 1987 | Non-fiction |
| The Panda's Thumb: More Reflections in Natural History | 1980 | Non-fiction |
| The Flamingo's Smile: Reflections in Natural History | 1985 | Non-fiction |
| An Urchin in the Storm: Essays About Books and Ideas | 1987 | Non-fiction |
| Eight Little Piggies: Reflections in Natural History | 1993 | Non-fiction |
| Full House: The Spread of Excellence From Plato to Darwin | 1996 | Non-fiction |
| The Structure of Evolutionary Theory | 2002 | Non-fiction |
| Ever Since Darwin: Reflections in Natural History | 1977 | Non-fiction |
| Leonardo's Mountain of Clams and the Diet of Worms | 1998 | Non-fiction |
| Hen's Teeth and Horse's Toes: Further Reflections in Natural History | 1983 | Non-fiction |
| I Have Landed | 2002 | Non-fiction |
| The Lying Stones of Marrakech | 2000 | Non-fiction |
| Rocks of Ages: Science and Religion in the Fullness of Life | 1999 | Non-fiction |
| Questioning the Millennium: A Rationalist's Guide to a Precisely Arbitrary Countdown | 1997 | Non-fiction |
| Ontogeny and Phylogeny | 1977 | Non-fiction |
| The Hedgehog, the Fox, and the Magister's Pox | 2003 | Non-fiction |
| La foire aux dinosaures | 1997 | Non-fiction |
| Erase Una Vez El Zorro y El Erizo | 2004 | Non-fiction |
| An evolutionary microcosm: Pleistocene and recent history of the land snail P. (Poecilozonites) in Bermuda | | |
| Ciencia Versus Religion - Un Falso Conflicto | 2001 | Non-fiction |
| Brontosaurus Y La Nalga Del Ministro | 1993 | Non-fiction |
| Punctuated Equilibrium | 2007 | Non-fiction |
| Un hérisson dans la tempête | 1994 | Non-fiction |
| Crossing Over: Where Art and Science Meet | 2000 | Non-fiction |
| Der Jahrtausend- Zahlenzauber. Durch die Scheinwelt numerischer Ordnungen | | |
| Darwin et les grandes énigmes de la vie | 1984 | Non-fiction |
| Comme les huit doigts de la main | 1998 | Non-fiction |
| Alexis Rockman | 2003 | Non-fiction |
| The Richness of Life: The Essential | 2006 | Non-fiction |
| Between Home and Heaven: Contemporary American Landscape Photography | 1992 | Non-fiction |
| Et Dieu dit: "Que Darwin soit!" | 2000 | Non-fiction |
| The Book of Life | 1993 | Non-fiction |
| The individual in Darwinʼs world | 1990 | Non-fiction |
| Conversations About the End of Time | 1999 | Non-fiction |
| Finders, Keepers: Eight Collectors | 1992 | Non-fiction |
| Illusion Fortschritt. Die vielfältigen Wege der Evolution | 1999 | Non-fiction |
| Les Quatre Antilopes de l'Apocalypse | 2000 | Non-fiction |
| L'Eventail du vivant | 1997 | Non-fiction |
| Natural history of Cerion VIII | | |
| Evolutionary Patterns In Pelycosaurian Reptiles | 1967 | |
| The Evolution of Gryphaea | 1980 | Non-fiction |
| Triumph and Tragedy in Mudville: A Lifelong Passion for Baseball | 2003 | Non-fiction |
| Is uniformitarianism necessary? | 1965 | |
| Allometry and size in ontogeny and phylogeny | 1966 | |
| An evolutionary microcosm: Pleistocene and Recent history of the land snail P. (Poecilozonites) in Bermuda | 1969 | |
| Evolutionary paleontology and the science of form | 1970 | |
| Private thoughts of Lyell on progression and evolution | 1970 | |
| D'Arcy Thompson and the science of form | 1971 | |
| Muscular mechanics and the ontogeny of swimming in scallops | 1971 | |
| Geometric similarity in allometric growth | 1971 | |
| The misnamed, mistreated, and misunderstood Irish elk | 1973 | |
| Size and shape | 1974 | |
| The origin and function of bizarre structures: antler size and skull size in the Irish Elk, Megaloceros giganteus | 1974 | |
| On biological and social determinism | 1974 | |
| Size and scaling in human evolution | 1974 | |
| Velikovsky in collision | 1975 | |
| Darwin's big book | 1975 | |
| Darwin's untimely burial | 1976 | |
| Evolution's erratic pace | 1977 | |
| The return of hopeful monsters | 1977 | |
| Sociobiology: the art of storytelling | 1978 | |
| Episodic change versus gradualist dogma | 1978 | |
| The panda's peculiar thumb | 1978 | |
| On the importance of heterochrony for evolutionary biology | 1978 | |
| Piltdown revisited | 1979 | |
| Mickey Mouse meets Konrad Lorenz | 1979 | |
| Shades of Lamarck | 1979 | |
| The Piltdown conspiracy | 1980 | |
| The promise of paleobiology as a nomothetic, evolutionary discipline | 1980 | |
| Is a new and general theory of evolution emerging? | 1980 | |
| The evolutionary biology of constraint | 1980 | |
| Piltdown in letters | 1981 | |
| Evolution as fact and theory | 1981 | |
| Agassiz in the Galapagos | 1981 | |
| Nonmoral nature | 1982 | |
| Darwinism and the expansion of evolutionary theory | 1982 | |
| The Ediacaran experiment | 1984 | |
| Carrie Buck's daughter | 1984 | |
| Covariance sets and ordered geographic variation in Cerion from Aruba, Bonaire and Curacao: a way of studying nonadaptation | 1984 | |
| The median isn't the message | 1985 | |
| Not necessarily a wing | 1985 | |
| The paradox of the first tier: an agenda for paleobiology | 1985 | |
| Evolution and the triumph of homology, or why history matters | 1986 | |
| Play it again, life | 1986 | |
| Darwinism defined: the difference between fact and theory | 1987 | |
| The lesson of the dinosaurs: evolution didn't inevitably lead to us | 1987 | |
| Life's little joke | 1987 | |
| Justice Scalia's misunderstanding | 1987 | |
| Trends as changes in variance: a new slant on progress and directionality in evolution | 1988 | |
| The ontogeny of Sewall Wright and the phylogeny of evolution | 1988 | |
| The streak of streaks | 1988 | |
| An essay on a pig roast | 1989 | |
| The wheel of fortune and the wedge of progress | 1989 | |
| Tires to sandals | 1989 | |
| George Canning's left buttock and the origin of species | 1989 | |