| 2000 | Satellite Award for Best Visual Effects, Steve Courtley |
| 2000 | Costume Designers Guild Award for Best Costume Design - Period or Fantasy Film, Kym Barrett |
| 1999 | BAFTA Award for Best Cinematography, Bill Pope |
| 1999 | BAFTA Award for Best Editing, Zach Staenberg |
| 2000 | MTV Movie Award for Best Action Sequence |
| 2000 | MTV Movie Award for Best Breakthrough Performance - Female, Carrie-Anne Moss |
| 2000 | MTV Movie Award for Best Male Performance, Keanu Reeves |
| 2000 | MTV Movie Award for Best Movie |
| 2000 | MTV Movie Award for Best Fight, Keanu Reeves |
| 2000 | MTV Movie Award for Best On-Screen Duo, Keanu Reeves |
| 1999 | BAFTA Award for Best Production Design/Art Direction, Owen Paterson |
| 1999 | BAFTA Award for Best Sound, Dane A. Davis |
| 1999 | ADG Excellence in Production Design Awards - Feature Film, Owen Paterson |
| 1999 | BAFTA Award for Best Special Visual Effects, Jon Thum |
| 1999 | Saturn Award for Best Costume, Kym Barrett |
| 1999 | Academy Award for Visual Effects, Steve Courtley |
| 1999 | Academy Award for Film Editing, Zach Staenberg |
| 1999 | Academy Award for Best Sound, David E. Campbell |
| 1999 | Academy Award for Best Sound Editing, Dane A. Davis |
| 1999 | Saturn Award for Best Make-up, Wendy Sainsbury |
| 1999 | Saturn Award for Best Actor, Keanu Reeves |
| 1999 | Saturn Award for Best Supporting Actor, Laurence Fishburne |
| 1999 | Saturn Award for Best Science Fiction Film |
| 1999 | Saturn Award for Best Writing, Larry Wachowski |
| 2000 | Amanda Award for Best Foreign Feature Film, Larry Wachowski |
| 1999 | Saturn Award for Best Direction, Larry Wachowski |
| 1999 | Eddie Award for Best Edited Feature Film, Zach Staenberg |
| 1999 | Saturn Award for Best Actress, Carrie-Anne Moss |
| 2000 | Japan Academy Award for Best Foreign Film |
| 2000 | Blockbuster Entertainment Award for Favorite Actress - Newcomer (Internet Only), Carrie-Anne Moss |
| 2000 | Black Reel Award: Best Actor, Laurence Fishburne |
| 2000 | Blockbuster Entertainment Award for Favorite Villain, Hugo Weaving |
| 2000 | Blockbuster Entertainment Award for Favorite Supporting Actor - Action/Science-Fiction, Laurence Fishburne |
| 2000 | Blockbuster Entertainment Award for Favorite Actor - Action/Science Fiction, Keanu Reeves |
| 1999 | BMI Film Music Award, Don Davis |
| 1999 | Bogey Award in Gold |
| 1999 | Cinema Audio Society Award for Oustanding Achievement in Sound Mixing for Motion Pictures, Gregg Rudloff |
| 2000 | Chlotrudis Award for Best Cinematography, Bill Pope |
| 2001 | Video Premiere Award for Best Original Retrospective Documentary, Josh Oreck |
| 2003 | DVD Exclusive Award for Artistic Achievement |
| 2000 | Empire Award for Best Film |
| 1999 | Golden Trailer Award for Art and Commerce |
| 2000 | Empire Award for Best Debut, Carrie-Anne Moss |
| 1999 | Golden Trailer Award for Best Action |
| 1999 | Golden Trailer Award for Best Edit |
| 1999 | Golden Trailer Award for Best of Show |
| 2000 | Hugo Award for Best Dramatic Presentation |
| 2000 | NAACP Image Award for Outstanding Motion Picture |
| 2000 | NAACP Image Award for Outstanding Actor in a Motion Picture, Laurence Fishburne |
| 2000 | Grammy Award for Best Compilation Soundtrack Album for a Motion Picture, Television or Other Visual Media |
| 2000 | Key Art Award for Best of Show - Audiovisual |
| 2000 | Las Vegas Film Critics Society Award for Best Visual Effects, John Gaeta |
| 2000 | Las Vegas Film Critics Society Award for Best Screenplay, Larry Wachowski |
| 2000 | Las Vegas Film Critics Society Award for Best Editing, Zach Staenberg |
| 2000 | Mainichi Film Concours Readers' Choice Award for Best Foreign Language Film, Larry Wachowski |
| 2000 | Golden Reel Award for Best Sound Editing - Sound Effects and Foley in a Feature Film, Susan Dudeck |
| 2000 | Golden Reel Award for Best Sound Editing - Dialogue and ADR in a Feature Film, Charles W. Ritter |
| 2000 | Las Vegas Film Critics Society Award for Best Production Design, Owen Paterson |
| Golden Reel Award for Best Sound Editing - Music - Musical Feature, Zigmund Gron |
| 2000 | Nebula Award for Best Script, Larry Wachowski |
| 1999 | Saturn Award for Best Special Effects, Jon Thum |